genewise output
Score 284.81 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000646_2.0    1 MSRFLVRLSTVVSKGATGKSVLPQKRIFAGIRLISSST            
                     MSRF+ RL  V+S+    +SV+  +RI    RL+S+S             
                     MSRFVARLVLVISQQTAARSVMLPRRIPLFTRLVSTSQ            
OMLM01005029.1:49394 atctggccgcgatccaggatgatcaaacttaccgtatc            
                     tcgttcgtttttcaacccgctttcggtcttcgttccca            
                     gtacctagcatttagaacatggagggctaccccacata            


SPP00000646_2.0   39                           LQSLTRYDQSTDWQRKLSPEQYV 
                                               LQSLTRY+++TDWQ+KL+PEQYV 
                               G:G[ggc]        LQSLTRYNETTDWQKKLTPEQYV 
OMLM01005029.1:49508 GGTACTTA  Intron 1   CAGGCcctcactagaagtcaacacgctg 
                      <1-----[49509:50006]-1>  tactcgaaaccagaaatccaaat 
                                               ggtcttctgtacgagatcaagta 


SPP00000646_2.0   63 VTREKGTEV                       PFSGIYLNHNEVGMYHC 
                     VTREKGTEV                       PFSGIYLNH EVGMYHC 
                     VTREKGTEV                       PFSGIYLNHYEVGMYHC 
OMLM01005029.1:50078 gaagagaggGTGAGTT  Intron 2   CAGctagatcactgggatct 
                     tcgaagcat<0-----[50105:50387]-0>ctggtataaaatgtaag 
                     ccaagatgg                       tttgcctcttagggcct 


SPP00000646_2.0   89 VCCDSPLF                          SEAKYDAGAGWPSFC 
                     VCCD+PLF                          SEAKYD+G GWP+F  
                     VCCDAPLF           S:S[agt]       SEAKYDSGTGWPAFK 
OMLM01005029.1:50439 gttggcctAGGTAACAT  Intron 3   TAGTtggatgtgagtcgta 
                     tggacctt  <2-----[50465:50690]-2> cacaaacgcggccta 
                     ccttgacc                          agcgtctggagaaca 


SPP00000646_2.0  113 EAHGTWEKDESHANIVRRPDNSLGSTGTEVICKH                
                     EAHGTWE+DESH +I+RRPDNSLGS GTEV+CK+                
                     EAHGTWERDESHTSIIRRPDNSLGSAGTEVLCKN                
OMLM01005029.1:50737 ggcgatgcggacataacccgaacgaggaggctaa                
                     acagcgagaagaccttggcaagtggcgcattgaa                
                     gttaagggtacccaatcctctcttttgggcttac                


SPP00000646_2.0  147                        CDAHLGHVFEDGPDPTGQRFCINSVA 
                                            CDAHLGHVF+DGPDPTGQRFCINSVA 
                                            CDAHLGHVFDDGPDPTGQRFCINSVA 
OMLM01005029.1:50839 GTGAGTT  Intron 4   CAGtggccgcgtgggcgcagccttaaagg 
                     <0-----[50839:51802]-0>gacatgattaagcaccgagtgtagtc 
                                            ttccgttgtttaacaatgactcctcc 


SPP00000646_2.0  173 LNFKPRE                                           
                     L FKPRE                                           
                     LKFKPRE                                           
OMLM01005029.1:51881 catacag                                           
                     tatacga                                           
                     cgtgcga                                           


//
Making a G in phase 1 intron
Making a S in phase 2 intron
>OMLM01005029.1:subseq(1259,59337).pep
MSRFVARLVLVISQQTAARSVMLPRRIPLFTRLVSTSQGLQSLTRYNETTDWQKKLTPEQ
YVVTREKGTEVPFSGIYLNHYEVGMYHCVCCDAPLFSSEAKYDSGTGWPAFKEAHGTWER
DESHTSIIRRPDNSLGSAGTEVLCKNCDAHLGHVFDDGPDPTGQRFCINSVALKFKPRE
//
>OMLM01005029.1:subseq(1259,59337).[49394:51901].sp
ATGTCTCGATTCGTCGCTCGACTGGTCCTAGTTATTTCTCAACAGACAGCAGCCAGATCT
GTGATGTTACCGAGGAGGATCCCTTTATTCACCCGCCTCGTATCCACATCTCAAGGCCTG
CAGTCTCTCACTCGTTACAATGAGACTACAGACTGGCAAAAGAAACTTACCCCAGAACAG
TATGTAGTCACCAGAGAAAAGGGAACTGAGGTGCCTTTTAGTGGGATCTACCTTAACCAT
TATGAAGTGGGGATGTACCACTGTGTCTGCTGTGATGCGCCACTCTTCAGTTCAGAGGCC
AAGTATGACTCTGGGACGGGATGGCCAGCATTCAAAGAGGCTCATGGAACATGGGAGCGG
GATGAAAGCCACACCTCAATAATTCGCCGCCCTGACAATAGCCTTGGTAGTGCTGGGACG
GAGGTCCTTTGTAAAAACTGTGATGCCCACCTGGGTCATGTGTTTGATGATGGACCAGAC
CCAACAGGTCAGCGATTCTGTATCAACAGTGTCGCCCTCAAGTTTAAGCCCAGGGAA
//
OMLM01005029.1:subseq(1259,59337)	GeneWise	match	49394	51901	284.81	+	.	OMLM01005029.1:subseq(1259,59337)-genewise-prediction-1
OMLM01005029.1:subseq(1259,59337)	GeneWise	cds	49394	49508	0.00	+	0	OMLM01005029.1:subseq(1259,59337)-genewise-prediction-1
OMLM01005029.1:subseq(1259,59337)	GeneWise	intron	49509	50006	0.00	+	.	OMLM01005029.1:subseq(1259,59337)-genewise-prediction-1
OMLM01005029.1:subseq(1259,59337)	GeneWise	cds	50007	50104	0.00	+	2	OMLM01005029.1:subseq(1259,59337)-genewise-prediction-1
OMLM01005029.1:subseq(1259,59337)	GeneWise	intron	50105	50387	0.00	+	.	OMLM01005029.1:subseq(1259,59337)-genewise-prediction-1
OMLM01005029.1:subseq(1259,59337)	GeneWise	cds	50388	50464	0.00	+	0	OMLM01005029.1:subseq(1259,59337)-genewise-prediction-1
OMLM01005029.1:subseq(1259,59337)	GeneWise	intron	50465	50690	0.00	+	.	OMLM01005029.1:subseq(1259,59337)-genewise-prediction-1
OMLM01005029.1:subseq(1259,59337)	GeneWise	cds	50691	50838	0.00	+	1	OMLM01005029.1:subseq(1259,59337)-genewise-prediction-1
OMLM01005029.1:subseq(1259,59337)	GeneWise	intron	50839	51802	0.00	+	.	OMLM01005029.1:subseq(1259,59337)-genewise-prediction-1
OMLM01005029.1:subseq(1259,59337)	GeneWise	cds	51803	51901	0.00	+	0	OMLM01005029.1:subseq(1259,59337)-genewise-prediction-1
//